Low Histamine Probiotics–Is Your Probiotic Making You Sick?
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Is it possible that your probiotic could be making you sick? Sadly, it is! In this post about low-histamine probiotics, I'll share what histamine is and what that has to do with probiotics, and why your probiotics might not be doing you any favors.
Probiotics are something that's commonly accepted as being good for everyone. Gut health is crucial for overall health, and probiotics are beneficial bacteria that help to recolonize the gut to restore balance. So one would think that taking probiotics is always a good thing. Right?
Wrong.

For some people, taking probiotics could be a completely bad idea.
That is, if they are taking the wrong kind of probiotic.
Histamine intolerance is something that we've talked about on the blog before. In this post we talked about what histamine intolerance is, and in this post we talked about how to deal with a histamine intolerance, or histamine allergy.
One thing that wasn't mentioned, however, is the role that probiotics play in histamine intolerance treatment.
Yikes—Could I Have Histamine Intolerance?
Around Christmas of this past year, I kind of “fell into” a detox. Just in case you were wondering, detox isn't the best idea during the Holiday Season. I don't recommend it. However, the whole thing led to some very interesting information.
It all started with my taking a heavy-duty liquid fermented superfood probiotic. I'd taken it years ago, and it had clearly done some heavy duty work on my gut. This time, however, I felt I needed to get out of my current probiotic rut and give that product another go. It went well for awhile, but then the reactions got a little intense. They subsided, but then resurfaced elsewhere, and I was pretty scared that I was histamine intolerant.
So I plunged into researching histamine intolerance online and was determined to figure out what I could do about it.
One of the recommendations that I found was to get on a low histamine probiotic so as to recolonize the gut without inflaming the already problematic condition.
What Is Histamine?
We covered quite a bit about histamine in this post, but here's a quick review.
Histamine is a chemical produced by your body that is involved in your immune system, proper digestion, and central nervous system during immune responses. It sends messages from your body to your brain and is a component of stomach acid.
Stomach acid is very important to overall health which you can an example of in this post about stomach acid and rosacea.
But the role of histamine that is central to our discussion today is how histamine is involved with the immune system.
You mostly like are familiar with the word “histamine” as it being a part of the word “anti-histamine” hose substances that one takes when allergies are being a bother. Histamines are alerting your body of a real (or mistaken) offender and cause an inflammatory response. And it causes this all over the body.
If your body can't break down the histamine well or fast enough, you end up with histamine intolerance.
That leads to the problems outlined in this post on histamine intolerance, but basically you can have all kinds of symptoms including things that one would typically associate with allergies, such as:
- itching
- sneezing
- rashes
- nasal congestion
- sinus pressure
- headaches
- fatigue
- insomnia and more.

Histamine and Probiotics
Basically, if you have a histamine intolerance issue, the last thing that you want is to be taking probiotics that make more histamine. If you do that, instead of getting healthier, you could be exacerbating an underlying health issue and well–your probiotics could be making you sick.
And if you are making your own water kefir, Homemade Sauerkraut, and more, that may or may not be a good idea depending on your issues with histamine.
Additionally, there are some probiotic strains that have been shown to be helpful in reducing the histamine response.
According to the research that I've done, the following are various probiotic strains and the effect that they have on histamine levels. Of course that research could change in the future.
Histamine Raising Probiotic Strains
- Lactobacillus bulgaricus
- Lactobacillus casei
- S. thermophilus
- Lactobacillus delbrueckii
- B Lichenformis – appears to raise histamine
- Lactobacillus helveticus (while this does raise histamines, it is known to reduce anxiety and ammonia, and restores cognitive function)
Histamine Lowering Strains
- Bifidobacterium infantis
- Lactobacillus gasseri
- Lactobacillus rhamnosus
- Bifidobacterium longum
- Lactobacillus plantarum
- Bifidobacterium breve
- Lactobacillus salivarius
- Bifidobacterium lactis
- Bifidobacterium Bifidum
- Lactobacillus reuteri**Lactobacillus reuteri is kind of in a class by itself. Many place it in the “histamine producing” category, but interestingly enough, it doesn't belong there. Lactobacillus reuteri does, in fact, cause histidine to convert to histamine, but this histamine raises cAMP which actually reduces the inflammatory response. Fascinating! I therefore put it in the “histamine reducing” class due to this aspect. (3)
Lactobacillus plantarum does not appear to have an effect on histamine, but it does lower and/or inhibit tyramine and putrescine.
Histamine Neutral Strains
- Lactobacillus acidophilus
- Lactobacillus Lactis
- Lactococcus Lactis
Bacillus Coagulans
It's possible that other strains might end up have their own special section as well in the future, as more is known about them, but Bacillus Coagulans appears to be a bit unique and I had trouble sorting this strain out.
There is research stating that the B. Coagulans SL5 causes increased histamine, but the B. Coagulans in 2 of the gut health products that I recommend below is MTCC 5856, which is a different strain. In fact, Lactospore (MTCC 5856) is used in some supplements that are made to support those with histamine issues.
Furthermore, there is also this research showing that B. Coagulans is helpful in allergic situations on a number of fronts.
Not Histamine Lowering But….
The following strains aren't typically referred to as being “histamine lowering” strains, but some research shows that they might support the body in ways that would benefit those struggling with histamine intolerance
- Saccharomyces-Boulardii.
There are a number of studies on its effectiveness in treating gastroenteritis. Some researchers have linked this condition to high histamine/mast cell issue. So possibly this strain could be a good support.
There are some reports apparently about this yeast causing histamine issues in some people, but it has been used for detoxifying gliotoxin and apparently increases DAO production which means it should help with histamine issues. - L. Paracasei has been shown to possibly help with leaky gut or allergies.
- L. Casei Shirota
Although L. Casei has been shown to raise histamines, L. Casei Shirota has been shown to modulate histamine levels. - Lactobacillus Crispatus has been shown to have anti-allergenic effects.
How to Sort All of This Information Out
This information is complicated but basically, if you're trying to avoid probiotic strains that might make histamine issues (and inflammation) worse, you want to avoid histamine-raising strains and get probiotics that have histamine-lowering strains in them. However, if they have histamine-neutral strains in them that's fine too.
So, in order to work on mine and my son's possible histamine issues, I went a hunt to find probiotics that had the strains that we wanted but didn't have the problematic strains.
It was quite a job, trying to figure out what to buy with all of those “lacto this” and “bifido that” words popping out at me. However, I did find some products that were just perfect for what we were looking for.
Where to Buy Low-Histamine Probiotics
I buy my supplements in several places. One of my favorite places to shop is Iherb. They have fast service and very good prices.
Some of the brands listed below, like Metagenics, claim that their product is fine when not refrigerated during shipping. If you're concerned about that, please take care to buy them either in a store where they are refrigerated or have them shipped with a cold pack.
Low-Histamine Probiotic Single Strains
Here are some individual strains of bacteria that should be helpful for histamine intolerance.
- Klaire Labs Ther-biotic Factor (Lactobacillus rhamnosus).
- Thorne Flora Pro LP or
- Jarrow Formula’s Ideal Bowel Support (Lactobacillus plantarum).
Most natural practitioners who recommend rotating between different kinds of probiotics so as to populate the gut with different strains. So—purchasing several or all of the above varieties and rotating between them would be a great idea to help you do just that.
Low Histamine Probiotic Blends
Personally, I think a blend is a better option than a single strain since you are getting more beneficial “bugs” into your gut. It's like facing the bad guys with a multi-faceted assault instead of a single strategy.
1. Smidge (Formerly GutPro)
Recently, our family started using Smidge (formerly GutPro). It's a probiotic unlike many others in that it's super concentrated. It's not cheap, but it lasts a REALLY REALLY long time.
Just a teensy bit on a teensy spoon is all you need.
I have tried so many probiotics over the years, and with many of them, I feel NOTHING. But with Smidge? Gurgle gurgle gurgle…..something is happening for sure!
Important: make sure to get the teensy stainless spoons that Organic3 has if you get this product because you are going to need them!
Depending on how you use the probiotics, you might want to order two sets of spoons so if one is dirty you have another set at the ready. You absolutely must not use the spoons for these probiotics if they are damp at all, as that will compromise the bacteria. Wet bacteria, in this case, is dead bacteria.
2. Seeking Health Probiota HistaminX
This blend was created for the express purpose of having a blend for those with histamine intolerance. Some have said that this probiotic blend has really helped with their histamine issues, both with probiotics and to other foods. The company has a great Subscribe and Save program so you can save money. Some people use this product alongside the company's Histamine Digest.
More Low-Histamine Blends
Here are some blends of various strains that should not exacerbate histamine intolerance and might even help heal it.
Can You Recover From Histamine Intolerance?
Good question.
This is a complicated topic, but an important one.
Here are some things that correspond with histamine intolerance:
- celiac disease
- food intolerance
- leaky gut
- digestive issues
- diet high in histamine
- and many others
All of the above can be linked to a gut infection called h pylori. Interesting.
So, my thinking is, if you address the above, the histamine intolerance might just go away.
Basically, instead of avoiding things that are supposed to be good for you long term, find out why your body isn't tolerating things and address the root cause.
My Experience With Histamine Intolerance
I personally found it to be true that histamine intolerance isn't a life sentence.
At one point, I worked with a practitioner due to multiple issues, but I was reacting badly to eating ferments. She recommended the low-histamine diet, but the thought of it was horribly stressful. Imagine freezing everything you eat (that has to be cooked from scratch), no vinegars, no collagen, and more.
I finally got a diagnosis of Lyme disease, and I started working on my health in new ways using supplements, addressing underlying infections, PEMF, red light, brain retraining, and phototherapy patches.
Now I can mostly eat ferments, grass-fed sausage, cheese, and collagen without major problems. In fact, I even ditched my life-threatening food allergy to egg.
The moral of the story is to never give up. Work on your health even when it seems hopeless, and you will likely see progress, including progress that no one thought was possible.
Other Research-based Posts You Might Like
If you like digging into health information, these posts might interest you too.
Is Glycerin Bad for Your Teeth? – and if so, WHY is it in toothpaste?
Does Erythritol Cause Heart Disease? – and if not, what's going on with that study?
Is Stevia Safe? – or does it cause infertility, DNA damage, and more?
What probiotics do you use? Please share in the comments below?
Sources:
1. https://www.ncbi.nlm.nih.gov/pubmed/18544899
2. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3042653/




I am curious as to which one you chose to use for your son?
I am noticing early signs of “sinus” issues with my almost 5 year old daughter after starting a probiotic with her.
Thanks!
Hi there. Right now, he takes the Miessence In Liven but I am thinking I will move him to the Gut Pro soon. He is just in the habit of it. The Gut Pro has several options.
Thank you very much for this post and all the research you did! It IS eye-crossing, mind-blowing to try to figure it all out. I am interested to hear how you and your son have done in lowering your histamine levels/reactions and repopulating your gut with these now that some time has passed. Also, do you find you prefer certain brands or strains over others? Finally, in the comments you mentioned you’d be trying the GutPro. Have you? What did you think of it? Thank you so much, in advance, for your response!
Hi Heather! You are so welcome. Yes, it’s crazy information. I have been on the histamine lowering ones for awhile now. And I did add in the Gut Pro just recently. I added info to the post – it’s definitely powerful and I would highly recommend it. I haven’t put my son on these yet but I have been meaning to. Thanks for the reminder.
I haven’t noticed if there has been a change as I have not tried a ton of histamine foods but I do use ACV fairly regularly with no issues. I would love to hear what you think if you try it!!
I am looking for a great probiotic and came across your article! Great info!!!
Thanks! I am sorry but I don’t allow fake names in the comments so please use your real name should you come back again. Thanks!
I looked up the histamine reducing strains from your list. They are all in capsule form. Are any of the strains, or combinations there of, available as yogurt starters for my homemade yogurt efforts? Can one just open capsules and introduce the strains into the milk assuming the low histamine strains even like milks as a growth medium? If so, in what combination and quantity per quart of milk please? Thank you so much.
Hi there. Sorry but I don’t know – thanks for reading!
Hi,
What were your results taking histamine lowering probiotics? Were you able to repopulate with them over ridding so to speak the histamine producing strains?
I went on a couple of probiotics for a couple of months and out lf the blue I became ill with what seemed like an ulcer. I also have moments of feeling flush and butterfly feelings in my gut
and stimulation as if NE or Adrenaline release. I noticed theat the probiotics I was taking contained a couple histamine producing strains. I stopped taking them but still am having histamine like reactions. I plan to start a nom histamine producing probiotic to see if that would help.
Hi there. Sorry for the delay – I have been inundated w/ things personal and professional. I don’t have labs to show anything but I seem to be tolerating histamine-producing foods better. Did you try any of them and how did it go?
Adrienne, there is no basis, in the literature, to your claim that L. plantarum is a histamine-reducing bacteria.
Did you read the links to sources in the post?
This concept is mind blowing to me. I have a dog who has had multiple mast cell tumors (and surgery to remove them.) She takes Benadryl daily to lower her histamine but at times still suffers from unexplained vomiting episodes. I started to research a good probiotic for her to try to prevent this, and found this post. WHAT a huge deal for dogs with histamine disorders, many pet probiotic formulas are full of fillers or they contain histamine raising strains. Thank you for this information!
You are so welcome!!
This product is new on the market and looks really promising (I just compared the bacteria contained to the histamine-lowering strains on your list and it appears to match up). Can you please take a look and let me know your thoughts? It’s also sold on Amazon.
https://www.seekinghealth.com/probiota-histaminx-60-capsules
Thanks so much!
Hello there and thanks for your comment. I’m so sorry for the delay in responding. I think I went to check it out and then forgot to come back. I actually have tried the product since and have a link on the post now to it. Have you tried it? What did you think? Again, sorry and thanks for reading!
I took Prescript Assist for a year as most probiotics were causing diarrhea. I took a UBiome test that showed I have zero lacto’s and bifido strains. I am taking Dr. Mercola probiotic with ten strains. Nine of the strains are histamine reducing but one is inducing, lactobacillus casei. Would the nine good strains negate the one inducing strain? I can’t say I am having any issues with this probiotic. Thanks.
I can’t say but I personally wouldn’t want to take a histamine inducing strain at all if I was dealing with this problem. If you are interested in trying something else, I am going to be trying to more soon – this is one of them: https://ishoppurium.com/products/advanced-probiotic-blend-60-ct You can use code wholenewmom to get $50 off your order of $75 or more. The company is just amazing. I will add it to the post. You get 15% off your orders ongoing and 25% off if you order within 30 days.
I am also going to be trying out Gut Pro this coming week: This is my affiliate link: https://www.corganic.com/#59cd1e7137927 I think you will love either of them.
Do you take all 3 of the above mentioned probiotics?
I mentioned a good number – which ones are you referring to?